[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 50 items for (author: fang & xy)

EMDB-36678:
PSI-AcpPCI supercomplex from Amphidinium carterae
Method: single particle / : Li ZH, Li XY, Wang WD

EMDB-36742:
PSI-AcpPCI supercomplex from Symbiodinium
Method: single particle / : Li ZH, Li XY, Wang WD

EMDB-36743:
PSI-AcpPCI supercomplex from Symbiodinium
Method: single particle / : Li XY, Li ZH, Wang WD

EMDB-36057:
Cryo-EM map of DAM (a newly designed immunogen for monkeypox virus) in complex with half of the antigen-binding fragment (Fab) of A27D7 and the single-chain fragment variable (scFv) of 7D11
Method: single particle / : Wang H, Yin P, Zheng TT, Han P, Qi JX

EMDB-37203:
Cryo-EM structure of HSV-1 gB with D48 Fab complex
Method: single particle / : Yang J, Sun C, Fang X, Zeng M, Liu Z

EMDB-36056:
Cryo-EM map of half of DAM (the A35 part) in complex with the antigen-binding fragment (Fab) of A27D7
Method: single particle / : Wang H, Yin P, Zheng TT, Qin LJ, Han P, Qi JX

EMDB-34948:
Cryo-EM structure of the apo-GPR132-Gi
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-34950:
Activation mechanism of GPR132 by NPGLY
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-34951:
Activation mechanism of GPR132 by 9(S)-HODE
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-35044:
Activation mechanism of GPR132 by compound NOX-6-7
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-32356:
Computational design of a potent Epstein-Barr virus fusion protein gB nanoparticle vaccine
Method: subtomogram averaging / : Sun C, Wang AJ, Fang XY, Gao YZ, Liu Z, Zeng MS

EMDB-32438:
The structure of PldA-PA3488 complex
Method: single particle / : Zhao L, Yang XY, Li ZQ

EMDB-32088:
Computational design of a potent Epstein-Barr virus fusion protein gB nanoparticle vaccine
Method: single particle / : Sun C, Fang XY, Wang AJ, Liu Z, Zeng MS

EMDB-30888:
Conformation 1 of S-ACE2-B0AT1 ternary complex
Method: single particle / : Yan RH, Zhang YY, Li YN, Ye FF, Guo YY, Xia L, Zhong XY, Chi XM, Zhou Q

EMDB-30889:
S protein of SARS-CoV-2 in the locked conformation
Method: single particle / : Yan RH, Zhang YY, Li YN, Ye FF, Guo YY, Xia L, Zhong XY, Chi XM, Zhou Q

EMDB-30890:
S protein of SARS-CoV-2 in the active conformation
Method: single particle / : Yan RH, Zhang YY, Li YN, Ye FF, Guo YY, Xia L, Zhong XY, Chi XM, Zhou Q

EMDB-30891:
Trypsin-digested S protein of SARS-CoV-2
Method: single particle / : Yan RH, Zhang YY, Li YN, Ye FF, Guo YY, Xia L, Zhong XY, Chi XM, Zhou Q

EMDB-30892:
S protein of SARS-CoV-2 D614G mutant
Method: single particle / : Yan RH, Zhang YY, Li YN, Ye FF, Guo YY, Xia L, Zhong XY, Chi XM, Zhou Q

EMDB-30893:
Trypsin-digested S protein of SARS-CoV-2 D614G mutant
Method: single particle / : Yan RH, Zhang YY, Li YN, Ye FF, Guo YY, Xia L, Zhong XY, Chi XM, Zhou Q

EMDB-30894:
S protein of SARS-CoV-2 bound with PD of ACE2 in the conformation 1 (1 up RBD and no PD bound)
Method: single particle / : Yan RH, Zhang YY, Li YN, Ye FF, Guo YY, Xia L, Zhong XY, Chi XM, Zhou Q

EMDB-30896:
S protein of SARS-CoV-2 bound with PD of ACE2 in the conformation 2 (1 up RBD and 1 PD bound)
Method: single particle / : Yan RH, Zhang YY, Li YN, Ye FF, Guo YY, Xia L, Zhong XY, Chi XM, Zhou Q

EMDB-30897:
S protein of SARS-CoV-2 bound with PD of ACE2 in the conformation 3 (2 up RBD and 1 PD bound)
Method: single particle / : Yan RH, Zhang YY, Li YN, Ye FF, Guo YY, Xia L, Zhong XY, Chi XM, Zhou Q

EMDB-30898:
Trypsin-digested S protein of SARS-CoV-2 bound with PD of ACE2 in the conformation 1 (1 up RBD and 1 PD bound)
Method: single particle / : Yan RH, Zhang YY, Li YN, Ye FF, Guo YY, Xia L, Zhong XY, Chi XM, Zhou Q

EMDB-30899:
Trypsin-digested S protein of SARS-CoV-2 bound with PD of ACE2 in the conformation 2 (2 up RBD and 2 PD bound)
Method: single particle / : Yan RH, Zhang YY, Li YN, Ye FF, Guo YY, Xia L, Zhong XY, Chi XM, Zhou Q

EMDB-30900:
Trypsin-digested S protein of SARS-CoV-2 bound with PD of ACE2 in the conformation 3 (3 up RBD and 2 PD bound)
Method: single particle / : Yan RH, Zhang YY, Li YN, Ye FF, Guo YY, Xia L, Zhong XY, Chi XM, Zhou Q

EMDB-30482:
SARS-CoV-2 spike protein and P17 fab complex with one RBD in close state
Method: single particle / : Wang X, Wang N

EMDB-30483:
Complex of SARS-CoV-2 spike protein and Fab P17 with one RBD in open state and two RBD in closed state
Method: single particle / : Wang N, Wang X

EMDB-30484:
P17-H014 Fab cocktail in complex with SARS-CoV-2 spike protein
Method: single particle / : Wang N, Wang X

EMDB-30485:
SARS-CoV-2 spike protein RBD and P17 fab complex
Method: single particle / : Wang X, Wang N

EMDB-9543:
IPET 3D reconstruction of an single CNTNAP2-antibody complex: conformation #1
Method: electron tomography / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9544:
IPET 3D reconstruction of a single CNTNAP2-antibody complex: conformation #2
Method: electron tomography / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9545:
Single particle reconstruction of CNTNAP2: conformation #7
Method: single particle / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9546:
Single particle reconstruction of CNTNAP2: conformation #8
Method: single particle / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9547:
IPET 3D reconstruction of a single CNTNAP2 - 1.8 nm nanogold complex
Method: electron tomography / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9548:
IPET 3D reconstruction of a single CNTNAP2 - 5 nm nanogold complex
Method: electron tomography / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9549:
IPET 3D reconstruction of a single CNTNAP2-C2 domain
Method: electron tomography / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9550:
Single particle reconstruction of CNTNAP2: conformation #6
Method: single particle / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9551:
Single particle reconstruction of CNTNAP2: conformation #5
Method: single particle / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9552:
Single particle reconstruction of CNTNAP2: conformation #4
Method: single particle / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9553:
Single particle reconstruction of CNTNAP2: conformation #3
Method: single particle / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9554:
Single particle reconstruction of CNTNAP2: conformation #2
Method: single particle / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9555:
Single particle reconstruction of CNTNAP2: conformation #1
Method: single particle / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9556:
IPET 3D reconstruction of a single CNTNAP2: conformation #8
Method: electron tomography / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9557:
IPET 3D reconstruction of a single CNTNAP2: conformation #7
Method: electron tomography / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9558:
IPET 3D reconstruction of a single CNTNAP2: conformation #6
Method: electron tomography / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9559:
IPET 3D reconstruction of a single CNTNAP2: conformation #5
Method: electron tomography / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9560:
IPET 3D reconstruction of a single CNTNAP2: conformation #4
Method: electron tomography / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9561:
IPET 3D reconstruction of a single CNTNAP2: conformation #3
Method: electron tomography / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9562:
IPET 3D reconstruction of a single CNTNAP2: conformation #2
Method: electron tomography / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

EMDB-9563:
IPET 3D reconstruction of a single CNTNAP2: conformation #1
Method: electron tomography / : Lu Z, Reddy MS, Liu JF, Kalichava A, Liu JK, Zhang L, Chen F, Wang Y, Holthauzen LM, Seshadrinathan S, Zhong XY, Ren G, Rudenko G

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more